Marc T. Facciotti: search on Z-Library

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1

Promoter Element Arising from the Fusion of Standard BioBrick Parts

Yao, Andrew I., Fenton, Timothy A., Owsley, Keegan, Seitzer, Phillip, Larsen, David J., Sit, Holly, Lau, Jennifer, Nair, Arjun, Tantiongloc, Justin, Tagkopoulos, Ilias, Facciotti, Marc T.

Journal:

ACS Synthetic Biology

Year:

2013

Language:

english

File:

PDF, 460 KB

english, 2013

2

Gene Gangs of the Chloroviruses: Conserved Clusters of Collinear Monocistronic Genes

Seitzer, Phillip, Jeanniard, Adrien, Ma, Fangrui, Van Etten, James, Facciotti, Marc, Dunigan, David

Journal:

Year:

2018

Language:

english

File:

PDF, 2.69 MB

english, 2018

3

Regulatory Multidimensionality of Gas Vesicle Biogenesis in Halobacterium salinarum NRC-1

Yao, Andrew I., Facciotti, Marc T.

Journal:

Year:

2011

Language:

english

File:

PDF, 1.95 MB

english, 2011

4

Conserved Substitution Patterns around Nucleosome Footprints in Eukaryotes and Archaea Derive from Frequent Nucleosome Repositioning through Evolution

Warnecke, Tobias, Becker, Erin A., Facciotti, Marc T., Nislow, Corey, Lehner, Ben, Tanay, Amos

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 979 KB

english, 2013

5

Specificity of Anion Binding in the Substrate Pocket of Bacteriorhodopsin †

Facciotti, Marc T., Cheung, Vincent S., Lunde, Christopher S., Rouhani, Shahab, Baliga, Nitin S., Glaeser, Robert M.

Journal:

Year:

2004

Language:

english

File:

PDF, 320 KB

english, 2004

6

Evolution of context dependent regulation by expansion of feast/famine regulatory proteins

Plaisier, Christopher L, Lo, Fang-Yin, Ashworth, Justin, Brooks, Aaron N, Beer, Karlyn D, Kaur, Amardeep, Pan, Min, Reiss, David J, Facciotti, Marc T, Baliga, Nitin S

Journal:

BMC Systems Biology

Year:

2014

Language:

english

File:

PDF, 1.13 MB

english, 2014

7

The Exploration of Novel Regulatory Relationships Drives Haloarchaeal Operon-Like Structural Dynamics over Short Evolutionary Distances

Seitzer, Phillip, Yao, Andrew I., Cisneros, Ariana, Facciotti, Marc T.

Journal:

Year:

2020

File:

PDF, 4.36 MB

2020

8

Role of Squalene in the Organization of Monolayers Derived from Lipid Extracts of Halobacterium salinarum

Gilmore, Sean F., Yao, Andrew I., Tietel, Zipora, Kind, Tobias, Facciotti, Marc T., Parikh, Atul N.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.26 MB

english, 2013

9

Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico

Sánchez-Nieves, Rubén, Facciotti, Marc, Saavedra-Collado, Sofía, Dávila-Santiago, Lizbeth, Rodríguez-Carrero, Roy, Montalvo-Rodríguez, Rafael

Journal:

Year:

2016

Language:

english

File:

PDF, 753 KB

english, 2016

10

Combining Microbial Culturing With Mathematical Modeling in an Introductory Course-Based Undergraduate Research Experience

Furrow, Robert E., Kim, Hyunsoo G., Abdelrazek, Samah M. R., Dahlhausen, Katherine, Yao, Andrew I., Eisen, Jonathan A., Goldman, Mark S., Albeck, John G., Facciotti, Marc T.

Journal:

Frontiers in Microbiology

Year:

2020

File:

PDF, 2.03 MB

2020

11

A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs

Phillip Seitzer, Elizabeth G Wilbanks, David J Larsen, Marc T Facciotti

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 847 KB

english, 2012

12

[ACM Press the Fifth Annual ACM Conference - London, United Kingdom (2018.06.26-2018.06.28)] Proceedings of the Fifth Annual ACM Conference on Learning at Scale - L@S '18 - Classifying and visualizing students' cognitive engagement in course readings

Yogev, Eran, Gal, Kobi, Karger, David, Facciotti, Marc T., Igo, Michele

Year:

2018

Language:

english

File:

PDF, 912 KB

english, 2018

13

Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis

Marc T Facciotti, Wyming L Pang, Fang-yin Lo, Kenia Whitehead, Tie Koide, Ken-ichi Masumura, Min Pan, Amardeep Kaur, David J Larsen, David J Reiss, Linh Hoang, Ewa Kalisiak, Trent Northen, Sunia A Tra

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 1.20 MB

english, 2010

14

A Predictive Model for Transcriptional Control of Physiology in a Free Living Cell

Richard Bonneau, Marc T. Facciotti, David J. Reiss, Amy K. Schmid, Min Pan, Amardeep Kaur, Vesteinn Thorsson, Paul Shannon, Michael H. Johnson, J. Christopher Bare, William Longabaugh, Madhavi Vuthoor

Journal:

Year:

2007

Language:

english

File:

PDF, 1.49 MB

english, 2007

15

JContextExplorer: a tree-based approach to facilitate cross-species genomic context comparison

Phillip Seitzer, Tu Anh Huynh, Marc T Facciotti

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 555 KB

english, 2013

16

Phylogenetically Driven Sequencing of Extremely Halophilic Archaea Reveals Strategies for Static and Dynamic Osmo-response

Becker, Erin A., Seitzer, Phillip M., Tritt, Andrew, Larsen, David, Krusor, Megan, Yao, Andrew I., Wu, Dongying, Madern, Dominique, Eisen, Jonathan A., Darling, Aaron E., Facciotti, Marc T., Whitaker,

Journal:

Year:

2014

Language:

english

File:

PDF, 1.58 MB

english, 2014

17

An Integrated Pipeline for de Novo Assembly of Microbial Genomes

Tritt, Andrew, Eisen, Jonathan A., Facciotti, Marc T., Darling, Aaron E., Zhu, Dongxiao

Journal:

Year:

2012

Language:

english

File:

PDF, 364 KB

english, 2012

18

Draft genome sequence of Halorubrum tropicale strain V5, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico

Sánchez-Nieves, Rubén, Facciotti, Marc T., Saavedra-Collado, Sofía, Dávila-Santiago, Lizbeth, Rodríguez-Carrero, Roy, Montalvo-Rodríguez, Rafael

Journal:

Year:

2016

Language:

english

File:

PDF, 470 KB

english, 2016

19

Crystal structure of the D85S mutant of bacteriorhodopsin: model of an O-like photocycle intermediate

Shahab Rouhani, Jean-Philippe Cartailler, Marc T Facciotti, Peter Walian, Richard Needleman, Janos K Lanyi, Robert M Glaeser, Hartmut Luecke

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 992 KB

english, 2001

20

The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data setsde novo

Richard Bonneau, David J Reiss, Paul Shannon, Marc Facciotti, Leroy Hood…

Journal:

Year:

2006

Language:

english

File:

PDF, 820 KB

english, 2006

21

Improved Motif Detection in Large Sequence Sets with Random Sampling in a Kepler workflow

Köhler, Sven, Seitzer, Phillip, Facciotti, Marc T., Ludäscher, Bertram

Journal:

Procedia Computer Science

Year:

2012

Language:

english

File:

PDF, 74 KB

english, 2012

22

Stable Closure of the Cytoplasmic Half-Channel Is Required for Efficient Proton Transport at Physiological Membrane Potentials in the Bacteriorhodopsin Catalytic Cycle

Wang, Ting, Oppawsky, Christoph, Duan, Yong, Tittor, Jörg, Oesterhelt, Dieter, Facciotti, Marc T.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.78 MB

english, 2014

23

RiboTALE: A modular, inducible system for accurate gene expression control

Rai, Navneet, Ferreiro, Aura, Neckelmann, Alexander, Soon, Amy, Yao, Andrew, Siegel, Justin, Facciotti, Marc T., Tagkopoulos, Ilias

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.63 MB

english, 2015

24

Training Interdisciplinary Scientists for Systems Biology

Facciotti, Marc T.

Journal:

Journal of Investigative Medicine

Year:

2009

Language:

english

File:

PDF, 87 KB

english, 2009

25

Elucidating Substrate Promiscuity within the FabI Enzyme Family.

Freund, Gabriel S., O'Brien, Terrence e, Vinson, Logan, Carlin, Dylan Alexander, Yao, Andrew, Mak, Wai Shun, Tagkopoulos, Ilias, Facciotti, Marc T, Tantillo, Dean J, Siegel, Justin B.

Journal:

ACS Chemical Biology

Year:

2017

Language:

english

File:

PDF, 1.71 MB

english, 2017

26

QS437. Integrated Biological and Computational Analysis of Important But Largely Under-Studied Organisms

Michael H. Johnson, Marc T. Facciotti, David J. Reiss, Kenia Whitehead, Amy Schmid, Amardeep Kaur, Min Pan, Paul Shannon, Dan Tenenbaum, Richard Bonneau, Nitin S. Baliga

Journal:

Journal of Surgical Research

Year:

2008

Language:

english

File:

PDF, 38 KB

english, 2008

27

Characterization of Conditions Required for X-Ray Diffraction Experiments with Protein Microcrystals

Glaeser, Robert, Facciotti, Marc, Walian, Peter, Rouhani, Shahab, Holton, James, MacDowell, Alastair, Celestre, Richard, Cambie, Daniela, Padmore, Howard

Journal:

Biophysical Journal

Year:

2000

Language:

english

File:

PDF, 337 KB

english, 2000

28

Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh

Wilbanks, Elizabeth G., Jaekel, Ulrike, Salman, Verena, Humphrey, Parris T., Eisen, Jonathan A., Facciotti, Marc T., Buckley, Daniel H., Zinder, Stephen H., Druschel, Gregory K., Fike, David A., Orpha

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 1.43 MB

english, 2014

29

Halobacterium salinarum NRC-1 PeptideAtlas: Toward Strategies for Targeted Proteomics and Improved Proteome Coverage

Van, Phu T., Schmid, Amy K., King, Nichole L., Kaur, Amardeep, Pan, Min, Whitehead, Kenia, Koide, Tie, Facciotti, Marc T., Goo, Young Ah, Deutsch, Eric W., Reiss, David J., Mallick, Parag, Baliga, Nit

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 802 KB

english, 2008

30

Energy transduction in transmembrane ion pumps

Marc T. Facciotti, Shahab Rouhani-Manshadi, Robert M. Glaeser

Journal:

Trends in Biochemical Sciences

Year:

2004

Language:

english

File:

PDF, 288 KB

english, 2004

31

Crystal structures of bR(D85S) favor a model of bacteriorhodopsin as a hydroxyl-ion pump

Marc T Facciotti, Shahab Rouhani, Robert M Glaeser

Journal:

Year:

2004

Language:

english

File:

PDF, 307 KB

english, 2004

32

Crystal Structure of the Bromide-Bound D85S Mutant of Bacteriorhodopsin: Principles of Ion Pumping

Facciotti, Marc T., Cheung, Vincent S., Nguyen, Doris, Rouhani, Shahab, Glaeser, Robert M.

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 965 KB

english, 2003

33

Ultrafast Protein Dynamics of Bacteriorhodopsin Probed by Photon Echo and Transient Absorption Spectroscopy

Kennis, John T. M., Larsen, Delmar S., Ohta, Kaoru, Facciotti, Marc T., Glaeser, Robert M., Fleming, Graham R.

Journal:

Journal of Physical Chemistry B

Year:

2002

Language:

english

File:

PDF, 154 KB

english, 2002

34

10.1038/9909

Yuan, Ling, Facciotti, Marc T., Bertain, Paul B.

Journal:

Nature Biotechnology

Year:

1999

Language:

english

File:

PDF, 145 KB

english, 1999

35

Membrane-protein stability in a phospholipid-based crystallization medium

Christopher S. Lunde, Shahab Rouhani, Marc T. Facciotti, Robert M. Glaeser

Journal:

Journal of Structural Biology

Year:

2006

Language:

english

File:

PDF, 532 KB

english, 2006

36

Correction to Promoter Element Arising from the Fusion of Standard BioBrick Parts

Yao, Andrew I., Fenton, Timothy A., Owsley, Keegan, Seitzer, Phillip, Larsen, David J., Sit, Holly, Lau, Jennifer, Nair, Arjun, Tantiongloc, Justin, Tagkopoulos, Ilias, Facciotti, Marc T.

Journal:

ACS Synthetic Biology

Year:

2013

File:

PDF, 99 KB

2013

37

Deprotonation of D96 in Bacteriorhodopsin Opens the Proton Uptake Pathway

Wang, Ting, Sessions, Ayla O., Lunde, Christopher S., Rouhani, Shahab, Glaeser, Robert M., Duan, Yong, Facciotti, Marc T.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.12 MB

english, 2013

38

The Effects of Practice-Based Training on Graduate Teaching Assistants’ Classroom Practices

Becker, Erin A., Easlon, Erin J., Potter, Sarah C., Guzman-Alvarez, Alberto, Spear, Jensen M., Facciotti, Marc T., Igo, Michele M., Singer, Mitchell, Pagliarulo, Christopher, Stains, Marilyne

Journal:

Cell Biology Education

Year:

2017

Language:

english

File:

PDF, 935 KB

english, 2017

39

Evaluation of Algorithm Performance in ChIP-Seq Peak Detection

Wilbanks, Elizabeth G., Facciotti, Marc T., Veenstra, Gert Jan C.

Journal:

Year:

2010

Language:

english

File:

PDF, 1.93 MB

english, 2010

40

Crystallization of membrane proteins from media composed of connected-bilayer gels

Shahab Rouhani, Marc T. Facciotti, Glenna Woodcock, Vincent Cheung, Christian Cunningham, Doris Nguyen, Behzad Rad, Chiann-Tso Lin, Christopher S. Lunde, Robert M. Glaeser

Journal:

Year:

2002

Language:

english

File:

PDF, 515 KB

english, 2002

41

Prevalence of transcription promoters within archaeal operons and coding sequences

Koide, Tie, Reiss, David J, Bare, J Christopher, Pang, Wyming Lee, Facciotti, Marc T, Schmid, Amy K, Pan, Min, Marzolf, Bruz, Van, Phu T, Lo, Fang-Yin, Pratap, Abhishek, Deutsch, Eric W, Peterson, Ame

Journal:

Molecular Systems Biology

Year:

2009

Language:

english

File:

PDF, 2.70 MB

english, 2009

42

Molecular dissection of the plant acyl-acyl carrier protein thioesterases

Marc T. Facciotti, Ling Yuan

Journal:

European Journal of Lipid Science and Technology

Year:

1998

Language:

english

File:

PDF, 141 KB

english, 1998

43

Structure of an Early Intermediate in the M-State Phase of the Bacteriorhodopsin Photocycle

Facciotti, Marc T., Rouhani, Shahab, Burkard, Fredrick T., Betancourt, Felicia M., Downing, Kenneth H., Rose, Robert B., McDermott, Gerry, Glaeser, Robert M.

Journal:

Biophysical Journal

Year:

2001

Language:

english

File:

PDF, 848 KB

english, 2001

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